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GSC MIxS packages for genomes, metagenomes, and marker sequences More...
7 A& {0 S2 g& p3 z! D4 v, iMIGS Cultured Bacterial/Archaeal
' Y7 r A* K* oUse for cultured bacterial or archaeal genomic sequences. Organism must have lineage Bacteria or Archaea.
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MIGS Eukaryotic
" t0 V4 m$ d9 ~( ~9 f& K DUse for eukaryotic genomic sequences. Organism must have lineage Eukaryota.9 Y3 l+ F+ k) R" T
& r$ D' \9 X1 o: X4 {5 VMIGS Viral0 x+ x U1 ?8 T4 L% ]6 j! {% i) U
Use for virus genomic sequences. Organism must have lineage Viruses.
8 T4 A; e' p( A- |; S O9 ^ d2 h. w
MIMAG Metagenome-assembled Genome
/ ?) ?" R% U, A" a/ _" W% aUse for metagenome-assembled genome sequences produced using computational binning tools that group sequences into individual organism genome assemblies starting from metagenomic data sets. Organism cannot contain the term 'metagenome'. Use the MIUVIG package for virus genomes.8 o: z; K9 _) L9 W6 P( q2 q5 |
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MIMARKS Specimen; e/ Y% o- X/ C1 q3 {8 Q4 C1 A) F0 s% h
Use for any type of marker gene sequences, eg, 16S, 18S, 23S, 28S rRNA or COI obtained from cultured or voucher-identifiable specimens. Organism cannot contain the term 'metagenome'.$ H( d9 B* D2 p
' ]! Y8 Z/ V# O* {. m, T2 GMIMARKS Survey related
$ b4 D+ D! K$ {$ D& }Use for any type of marker gene sequences, eg, 16S, 18S, 23S, 28S rRNA or COI obtained directly from the environment, without culturing or identification of the organisms. Organism must be a metagenome, where lineage starts with unclassified sequences and scientific name ends with 'metagenome'., Z6 r3 k; m9 O# O# ] `
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MIMS Environmental/Metagenome
$ T5 j6 T7 L" A h0 e! KUse for environmental and metagenome sequences. Organism must be a metagenome, where lineage starts with unclassified sequences and scientific name ends with 'metagenome'.
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% V+ L0 q' u! {) m1 h) qMISAG Single Amplified Genome: L: _9 j6 ]& t9 l& r
Use for single amplified genome sequences produced by isolating individual cells, amplifying the genome of each cell using whole genome amplification, and then sequencing the amplified DNA. Organism cannot contain the term 'metagenome'.+ b) B' @9 f$ S" F
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MIUVIG Uncultivated Virus Genome& m2 p# ~! C. S& n$ ~0 b( }
Use for uncultivated virus genome identified in metagenome and metatranscriptome datasets. Organism must have lineage Viruses. |
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